I'm not Jon, but...
David1 wrote:I also was under the idea that when I do a download of the 9800 using the jp1 I am getting the learned rom info, is that correct ? Or am I just getting the one rom ? If so is it different with a rs remote?
Unfortunately (for you), the URC-8800/URC-9800 is very unique in this respect. The learning keys are connected to a second processor and EEPROM, and the learned data is not available via the built-in JP1 connector. This is the reason for the hardware "hack" mentioned above: adding another connector to the second processor's EEPROM allows you to download the learned data.
If you don't feel like doing a hardware mod to your 9800, then practically any other learning JP1 remote currently sold by UEI or Radio Shack will provide this functionality out-of-the-box. (Yes, Steve, that includes the infamous URC-8810w at Wal-Mart too.

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David1 wrote:The big draw for me of the 9800 is its RF capibilities.
The dp870 is an AC-3 processor and it is located with my sound gear in a second room without line of sight.
The Radio Shack 15-2117 also has the RF link, and may be available cheap at the moment, if you can find one.
David1 wrote:Do I do each upgrade as a seperate upload, each building on the previous?
Each upgrade is independent of any other upgrade, so I don't know what you mean by "building on the previous", unless you mean to say that each upgrade makes the remote more capable of controlling your equipment.
David1 wrote:Would I gain a lot of information from a download of the learned comands?
Yes, if you were trying to build your own upgrade with KM or RM, then the download will usually tell you all you need to know. However, in this case, I think Jon has already given you the information you need.
David1 wrote:Can I send you my KM file and see if you can see something I am missing?
You'd be better off by uploading your KM file to the diagnostics area at the Yahoo JP1 group and posting a message here. That way, Jon, or someone other than Jon, might be able to help you.